NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_102703

Scaffold Ga0248169_102703


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_102703 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21377
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)42 (95.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034010Metagenome175Y
F037510Metagenome167N
F044942Metagenome153N
F091106Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10270314F091106AGGAMNRRQSPTPQLRWIDKKYYYYDSYDSQNQTISVLEQWHQNEVLTETHGWQPVEGGEWKEVRKEKNT
Ga0248169_10270321F034010GGAGMNKIWDDIILPIGGATLMVIVFGTVIGSIILALYSIFGPTPEQQAEFNKPRLAYKFEDCDIWIFENKHYVTRCGNHTVTERNYSESCGKGCTRQKVERIENE
Ga0248169_10270336F044942AGGAMLEHLIDYEPEVSDNSHGFVSLEKNTPSQTVDAKVNTLDWLQQLGAVDTDTKADELDTQHARKAFANIVSATPDEITHSSLAEVKTPQAVRHLVTMLTAYDWEFVERAKELRGYTVAKILEECENPSANIRLKALALLGKVTEVGLFTDKIEVKKTELSDAEIDSKIKEKLNRFMGVVDVTDVGDVLETQRLNA
Ga0248169_1027039F037510GGAMIKLTYEHICDGCKKTLDTEVYECSDYPGMEFPRPHRRFSFNWLGINAQLCKDCAKPLYEAQEQTMKIIIANRGQ
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