NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_103812

Scaffold Ga0248169_103812


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_103812 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16635
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004256Metagenome446Y
F024484Metagenome / Metatranscriptome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10381214F004256N/AMLENFSYYYNQYPGKSPWRNNLIYTSLMSADKKIFVQHYTTEGDYHKGQNQVVDPNLMNEKWLREVNYLTQMRNTYPALVPKIIKIDLEARKLFLEVDGPDFWQRSLDANCSFDEILPDWQEQMINIIKAHKSMGWYKYSMHPSSYFIVDGKLKSINYFFTYRKDEANISIADVESHIYSTRQDEMRKHLDSLGIEWNKPQSFDVLEQLCWESFRTNYPADFIERVKCLK
Ga0248169_1038123F024484AGTAGMLLPTNYTVDTSLFQEACHHLPKGKMRTTINNPTGSFFYDPWVIKDEYKGTVWETLYNSLPVTKGEARIIILDPNQCYQIHADIDDRYHLNILGDNSYLIDLIRDNMYPLSQDGIWYDMDAGFLHTAANFGRRARIQLVVRHLLKKNKLNDPVEVAIVTTMSNSDHARSIFDSTISPWLNEANKLGFISNFEFTSVSTKFSVEKDKLDSLKNVLPEGFELI
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