NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0248169_104525

Scaffold Ga0248169_104525


Overview

Basic Information
Taxon OID3300022602 Open in IMG/M
Scaffold IDGa0248169_104525 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Trout Bog Lake, Vilas County, Wisconsin, United States - 30JULY2014 epilimnion
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterU.S. Department of Energy (DOE)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14624
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (81.48%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Trout Bog Lake, Vilas County, Wisconsin, United States

Source Dataset Sampling Location
Location NameTrout Bog, Vilas County, Wisconsin, USA
CoordinatesLat. (o)46.0412Long. (o)-89.6861Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F016143Metagenome249Y
F071957Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0248169_10452517F071957GGAGGMEKKELSPLAKQLLGGAGHIEVFTQAEFDDALSVAKAEIMMVAIETTKKAIQIERDACADLALEWSQEELSVAIRNRMKPKETE
Ga0248169_10452519F016143AGGAGMDKDYIYTPAGTDITIRWKANGWIPPSDLPEYQAKWKYYQELPMRKLDDHAKIEYEAVMRKAKVARIK
Ga0248169_1045254F000952AGGAGMATSDYEQRTANVPQHKRIAQGEKLDGTAMEPKGGSKSSSSGSKSGGLSHASKKK
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