NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242677_1000644

Scaffold Ga0242677_1000644


Overview

Basic Information
Taxon OID3300022713 Open in IMG/M
Scaffold IDGa0242677_1000644 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2349
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042798Metagenome / Metatranscriptome157Y
F043877Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0242677_10006442F042798GGAGMPSSISDSKSKAIANVKALAVICVLLILVFEIASVYLLNHQSATYVRISRQYNEALKMRPAGAGEPPSVLMVGNSLLLHGVQVNRLQEMTSSRMRLYPIFLEATGYYDWLYTLHGLFLRGARPQAVVLGVGVNYFLENGVRQDYVPMMFFNARDTFAVTSDLKLDRTATSNLLLAHSSTFWDTRSAIRMQVLNHLVPHLEDLFSLVNQKPAVPEGREFAKISIPRLQRLRELCEANGARLILLVPPTLDSENAVNQMAAASQAAGVDVSVPIDPVTLSAKFYQPDGMHLNRDGAVIFTSALAEDLSEKVRALETVAAQK
Ga0242677_10006443F043877N/ADLAWRSEYTTAFLMLSLFSIPLFIVDLLMEAGNQEYPFANTSYAFRTALATTAFVVLALFSGSNLNAFVYFRF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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