NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242675_1015771

Scaffold Ga0242675_1015771


Overview

Basic Information
Taxon OID3300022718 Open in IMG/M
Scaffold IDGa0242675_1015771 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1000
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001274Metagenome / Metatranscriptome733Y
F032874Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0242675_10157711F032874N/ASMCDVFRSSAPREFARKRASRANRWKWNSNMPTNLKIVPRLSSFAAAAFVLLAGLNADAQSPARSSVVIPPIPPGQARIWVYSGSQPTSPFNYPRMEAITFNGAKVGYEQLGQGFYRNVAPGHYVIASPSFLALDPSQSATVDLAAGQEAYLKLDGLGWPNGGGENTVVEYYVRLMPPQSARTAVAQLAYLSGD
Ga0242675_10157712F001274AGGAGGVTIYQITLRDRETQTVVGYYNGAWTTDRRRALAFRRREAAEAHAARMRDRCPRNAELINVEEIAAN
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