NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0242672_1006089

Scaffold Ga0242672_1006089


Overview

Basic Information
Taxon OID3300022720 Open in IMG/M
Scaffold IDGa0242672_1006089 Open in IMG/M
Source Dataset NameMetatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1301
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027219Metagenome / Metatranscriptome195Y

Sequences

Protein IDFamilyRBSSequence
Ga0242672_10060891F027219GGAGMKKTHLLLSTAVGLAFVIAGPAALAVGKKHAPAGNAKAHAAVDFSKSKFKQPKHQQRHGKPNHLKPRMLVESWAAPTASITLQAGAFTPEDAATTARCLKACTVVTMNTAELLSYYSYTQVAICPVVDGYFTNGSCYFSGAISPKEEYTNRTNQTNLTVASGSHVLQTYLYVTAPAYLGHYQNDYTLYQAHAPK
Ga0242672_10060892F027219GGAGMSKTKLLLSTAVGLAFVVAGPSAMAVGKKHPNGAKHASHLNFSKTAFKTAKQQPPRHTGLKERFLVETWGVTTVSVLAATLTADDSPTSINCRNVCTVVTDNTAEFLSYYSYNQIGLCPVVDGYFTNGSCYFSGAISFQNLYTNKTNQTNLQVGTGSHTVQTYVYTTAPAYMGHYQNDYHVYE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.