NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242657_1150261

Scaffold Ga0242657_1150261


Overview

Basic Information
Taxon OID3300022722 Open in IMG/M
Scaffold IDGa0242657_1150261 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)613
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022025Metagenome / Metatranscriptome216Y

Sequences

Protein IDFamilyRBSSequence
Ga0242657_11502611F022025N/AMTPQISQTADKHIESELDRLTYSAYLLTLDPGLAVSVVMTAIDGSLEEITTGPDLLERTVELALEQLRRESRTEGDGESSAFDAVLYGHSAAINSAPFQSLKDLSGNPILMLDSTSRIAFVLHHVLGYKLGEAAAKAQMDETEYRSQLRKAYLRLASFHSEGQASGGKFLEEPALA
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