NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242654_10013456

Scaffold Ga0242654_10013456


Overview

Basic Information
Taxon OID3300022726 Open in IMG/M
Scaffold IDGa0242654_10013456 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1862
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000825Metagenome / Metatranscriptome874Y
F015937Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0242654_100134561F015937N/AGMYRGALAGQHDTLIYRFLDDNIEYKAVIIDVTDKANDSANLLGEAEYLFQENKKLRMDTFGRVDRQNGRKLTIDLPNNGGRSTAAFYFVNGRIVSLQATVLPANGDYGTPEMGRFIDSITFFTIRAPEDAIELPAPPK
Ga0242654_100134562F000825GGAGGMRRWILADMGGCAVAMAAIPAHAAWKSYVNRELGFSFMAPGEVKTSIGNSRTELAGPRQSIVYSSVEDNIEYKVTVWSFLQAQAEGATLLGERTYLFQNHRKLLMDTFARVEPGKDAVYGRKMVIELPDNKGRVTGAFYFNKGKLYAFEATVLPAHGDFGSPEPARFVDSLVFTLSRTEPGAVELKTPELE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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