NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0242654_10026177

Scaffold Ga0242654_10026177


Overview

Basic Information
Taxon OID3300022726 Open in IMG/M
Scaffold IDGa0242654_10026177 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1484
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017460Metagenome / Metatranscriptome240Y
F088621Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0242654_100261772F017460AGGAGLKKIIGNNKGIDTILAALLMVVIVVVASVMVYAWSTGLLGTLLVTPNTGKEAMNIENYAFNSNVNVTLDLRNTGSVSITLNSYYVKDSSGNQWSRLTWQTDAGGQHPLAISPNALGIVYVSIGTGTTGSGGPCGPNGNTYCTQTGSSFTTFNTGFSYTILVVTSRNDQFSFTVTK
Ga0242654_100261773F088621AGGMNPVRKYLKNKKGINTILASLLMVVIVVVASVMVYAWSTGLLGTLLVQPNVGKEALTMDTYAFPSGGSPANSNVSLTLRNAGTVAVSFASYYVKNATGTTFTQSAYTLGPTIQPNSPGIANIGVGCTGCGSFSTSSFTFVSGNSYTVTLVTSRNNQFTFTVVR
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