NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224566_100059

Scaffold Ga0224566_100059


Overview

Basic Information
Taxon OID3300022728 Open in IMG/M
Scaffold IDGa0224566_100059 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7347
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012243Metagenome / Metatranscriptome282Y
F016839Metagenome / Metatranscriptome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0224566_1000596F012243N/AMSALSYIPSFLLIALLAILIRRRAYTFLPYFFAYTTFAVIADFARFLAHNYQHPYYVTYWTTEAGYDVLGILVMYEATRGVLGNLSQSWWARIAFPAILLAGLGLSLARATATPIQLGRRVAYYILVGEIAVRFVQVFVFSGLVTLVPLIGLRWRQYPFGVATGFGLYATVSLLLTTKFSDFGTRFIFLWGVTSLVAYSLAVLIWIWFFSVPQKVEQSSSGLSAPSPGDLKQYKDALRRM
Ga0224566_1000597F016839N/AMRYGECARFMFSIVFTWLIVAWGAIACIYMLRCAWSRFPKRDVDDVIPFLYPVDISLAESLLDPASEFEYRWNLSPRQFRAAQRKRMRLYLELTRRMAHNSRVLVEYADAEKNSPDPRRASLASALQEKAIEVRIYALLAGIKLRLCLFLRSDILAVIPALAHLRTTCDIDGLETYSALKTVAAAAFVQLPPEELDSLTRNL

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