NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224566_100077

Scaffold Ga0224566_100077


Overview

Basic Information
Taxon OID3300022728 Open in IMG/M
Scaffold IDGa0224566_100077 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6739
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002363Metagenome / Metatranscriptome567Y

Sequences

Protein IDFamilyRBSSequence
Ga0224566_1000776F002363GGAMTTLELCVVVQLCLAFGVAGLLWPERLMPIFEVLMFPWAASYRGIRANSIAAIGLSVLLFARLFAGIG
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Institute for Fundamental Biomedical Research
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