NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224566_100110

Scaffold Ga0224566_100110


Overview

Basic Information
Taxon OID3300022728 Open in IMG/M
Scaffold IDGa0224566_100110 Open in IMG/M
Source Dataset NameSpruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6107
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.044Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000249Metagenome / Metatranscriptome1459Y
F001709Metagenome / Metatranscriptome648Y

Sequences

Protein IDFamilyRBSSequence
Ga0224566_1001107F001709GGAGMPQEVSVSYQAIKSKVYRLIDTLVVGEKSEIEVQESIRRWWELIHPADRPIAQKYLLIVLGRSGQALSAIEEGLTDAANTDESCKPLESVRFKLIERVVKTNGKAAALSQ
Ga0224566_1001108F000249GGAGGMKTSLWILVFPLFTLTLCGAQSAPPAGNSQSSGTQSSTVSISQSEDRMFFPKDMFWGWAQFDLAPPHNEIDPNICAGNAGQYGGVNAPCSMFARYMLSGMLEVRPFGRGELRRFMVFGAPSFLFGKTIPQTLYTWSPDAIGVEHSWGAGIYIGKGFEFRVTQHFLFDRLGARDTNLGVADLGNNGPWGRYMTVGVRKSFGTRRW
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