Scaffold Ga0224566_100131

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0224566_100131

Scaffold Ga0224566_100131

Overview

Basic Information
Taxon OID	3300022728 Open in IMG/M
Scaffold ID	Ga0224566_100131 Open in IMG/M
Source Dataset Name	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5859
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location Name	Czech Republic: South Bohemian Region
Coordinates	Lat. (^o)	49.044	Long. (^o)	13.617	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001818	Metagenome / Metatranscriptome	630	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0224566_1001313	F001818	N/A	MFRRRKTDQTPGEGGPSEIEKYRHAWHSYVARRNLVVVLFLSFVFVGLLIGKLKLGEPADLAIMVGWIGVYLAGGWWLTEWKCPRCGKIFGNRLWTQRCISCDLSKDEVAAVARGK

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.