NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0224571_109379

Scaffold Ga0224571_109379


Overview

Basic Information
Taxon OID3300022734 Open in IMG/M
Scaffold IDGa0224571_109379 Open in IMG/M
Source Dataset NameSpruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)672
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameCzech Republic: South Bohemian Region
CoordinatesLat. (o)49.0431Long. (o)13.617Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011871Metagenome / Metatranscriptome286Y

Sequences

Protein IDFamilyRBSSequence
Ga0224571_1093792F011871AGGMTLHDQDKEQVSNGEAPLPAVSANSLARCLGVSPKVIYDLAKAGVVERSPGRLYPLEDSVRRYCDHLRAQIGNRT
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