NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228711_1044784

Scaffold Ga0228711_1044784


Overview

Basic Information
Taxon OID3300022739 Open in IMG/M
Scaffold IDGa0228711_1044784 Open in IMG/M
Source Dataset NameRoot nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1147
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Nodule → Unclassified → Root Nodules → Root Nodule Microbial Communities Of Legume Samples Collected From Usa, Mexico And Botswana

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.0136Long. (o)-118.4673Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012754Metagenome277Y

Sequences

Protein IDFamilyRBSSequence
Ga0228711_10447843F012754AGAAGMKWDVEVEEGSAKKKQSSDTQYESPMFVMTPAMARMTKEYADTMIAEKKQKEAEYLAARDAKLQSLGLENCDEYFVQKIAEVRQIAGSVEQQVVEEAQEMLELIPEASVAAPESTSVAEVSEAPAQVIQTSNLPFIIPTPISPSNDSDLDDVPIGQRMRKLSKPSPQPKQTTPQLPLQAEQSSAAAECTEDLEDPPASDLPQCDSPSNLFSLERHLGGEITKTPEKATKSVPQQ
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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