NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228701_1000972

Scaffold Ga0228701_1000972


Overview

Basic Information
Taxon OID3300022746 Open in IMG/M
Scaffold IDGa0228701_1000972 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 11-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20892
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9255Long. (o)-83.5226Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002997Metagenome / Metatranscriptome514Y
F014737Metagenome / Metatranscriptome260Y
F022651Metagenome / Metatranscriptome213Y
F023109Metagenome / Metatranscriptome211Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0228701_100097210F002997N/AMTIARFENITINNLAFGKSDFGEQSTTQTVWFGTRARVADVANSVKIADRYRLYQDLVNFTLNYTPNMKTIVDNQQSYSITWRGNDWRITDVRESNDRMRVTLMCYRSDPVTAV
Ga0228701_100097214F022651N/AMTKDDKKSSLDLLHFLLLQSSERKDWFSFSTQRITAVALSHEIAAKHADKLTPTEAVDYAVELNQEIYNKIINNRK
Ga0228701_100097220F014737GGAGMTAMSALNGPQIRQAEFVRLTVGKAETVYTFCNAAAPITVDGISFTNLGILLSVGDVQRDMRATSDDMTISLTGINPEAVSIILSSDIKGSLVEIWRGFFDDNNQIITSPTTQFFKRYQGIINSVSISEDFNTQARTRVATCSIACSSMRRVLENRLSGVKTNQSSWQFFYPGDISMNRVSTIANTYFDFGKPPQTDTQATDTTTSYDGSMAATGENIPGTYGY
Ga0228701_100097221F023109GGAMIRLATRYDIPRLLEIVESYAYENPIQVLAQPHNHFPKYVEELLFSIIAGRGFIYIDNNMRGAIIAIKQSNIWSPKVKELHELLWWVEPEHRNGTVGGRLWKAFDERATKMLEVGDIDVAITSISASGPLIDYSKRGYKPFGASFVKE
Ga0228701_100097223F024113GGAMAVFNRNTLAQVSGFDNPILAGELVWDQQTYWNLSFTSNGLPVDLTGATIDAQIVRRELSNIVDTRNGLTFDIADYSPTPTAIPLTVSNINTALGTCTLVIDAGAWSLMSTDPELEINAQNPVGYSGRVKVSFPAVGSVPADDMIIFLLFIVRSDGVIVL
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