NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228703_1000459

Scaffold Ga0228703_1000459


Overview

Basic Information
Taxon OID3300022747 Open in IMG/M
Scaffold IDGa0228703_1000459 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30122
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (13.73%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (16.67%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000557Metagenome / Metatranscriptome1026N
F000847Metagenome / Metatranscriptome861N
F001129Metagenome / Metatranscriptome768Y
F003267Metagenome / Metatranscriptome496N
F003459Metagenome485N
F004837Metagenome / Metatranscriptome421Y
F005845Metagenome / Metatranscriptome388Y
F006105Metagenome / Metatranscriptome381Y
F007748Metagenome / Metatranscriptome345N
F009057Metagenome / Metatranscriptome323Y
F009318Metagenome / Metatranscriptome319Y
F011581Metagenome / Metatranscriptome289N
F012449Metagenome / Metatranscriptome280Y
F012656Metagenome / Metatranscriptome278N
F020667Metagenome222Y
F024098Metagenome207Y
F035287Metagenome / Metatranscriptome172N
F046337Metagenome / Metatranscriptome151N

Sequences

Protein IDFamilyRBSSequence
Ga0228703_100045913F006105AGGVIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDYTLLKSDNLSLYTERYDKFQIAVGSLETGSYRYEVYDTSSTVSAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVRVFDSTFDPSFA
Ga0228703_100045917F000847N/AMSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLALVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVNLTRFVESRDDRTAGWVATMTFEIPYSHSVCEIPT
Ga0228703_100045918F001129N/AMLGQGGTMQFIDAAVSGANFDFIVVNTAATFTTLTGTGSENLLTAYSLSGKSVSAGIVISGRNGGKITAVTPSVGSVIGYTFL
Ga0228703_10004592F000557N/AMKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPATSLTKRYKEIIKEWNELPALAYKRKFKAGGKWWIPTMFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWFGWFAKKYDGASHAERAELMKKHAKIGDVGGVVSFFLLSSEAYLQILSDYSKHLTKKAQDQ
Ga0228703_100045921F009057N/AMPTFRKFAFPSQKVADQLLASLQPLDTAVPLGELDGLVCYDILFQDACPASLNAYIVWPKPCGVHSFLGWDAQYEADYQEFATPQTK
Ga0228703_100045923F007748N/AMDAGQQVQQAYRSSQGVNLIETTIIGTVSAVVGGAVAWMTKGKFTADSLQVKQAQAVLAMWQQTAEAQQKELAQLRNEIVSLRERIEHLENTIQVLEAENATLRQA
Ga0228703_100045926F011581AGGMTYHSTRPAKALTNALERLMISISTQELEENHVLLCEYRRACDLLGYDPAKAQWSNVEGVNASGLPNDEPHTVDYYYLLNPEE
Ga0228703_100045931F003459N/AMNQELVTIPKSDISKADIADIAANLILRIEEGEVNPIAAHVRLKAVVKAVEQVLKATEQTVWDEAEKNGKTFSAFGADIQLKEGAITPDYQHDQVWSDLQAAMKAREEQLKMAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFKTT
Ga0228703_100045933F035287N/AMTRPAPPKKKKGVQKIGRVAGLQAAILLLEKPYKAKELAKVLGMHMRITYRILDDLRATGHLYSYRCYYWFDPKKNNDLQHLIPVKDPYL
Ga0228703_100045938F009318N/AMHRFLLLFLLTSCTNDRPWRVIEVRPKGDACEYVLSRSNGFGPQLKNITAPCGKYRLFQTINP
Ga0228703_100045940F005845N/AMKPTPTDFRRWQIHIRKECVNCPRPDHAETISPWRVNWVLLGHVLQAKKA
Ga0228703_100045941F046337N/AMTWTRLTKYTMPIPMEEVFLALEDGNYAVGWLTEGQITFTNIHGEAWWTHEVAAWMYPKK
Ga0228703_100045944F012449N/AMEVILTLLVSSLTALAIAEYHVLPQAWYRTWLGRHKPFSCVTCLTFWTGFVLTLLTCDWMLAPVYGLASAGLTVVILQVTNR
Ga0228703_100045945F004837N/AMTQDEYLLATKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYEQADQFAQANQQTVTHALTNTPSE
Ga0228703_100045947F012656AGCAGGMDSLMMVITTLCDCIGAVDESNSPNAFAVKMKIVDKIDSLIDKIEY
Ga0228703_10004595F024098N/AMAITVLSGSPQAATPVYNKMLFKVSGSLTSATNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNIAFAGNLEQLELADWSGGVYFNSYIFDGVSRALTTPTTRTVYGSDYGFLCMGQSGTPFDRAEIAYPTRTFTVNIPASVSGSIARFGAGPMNLKALTSGQCSDGQAGSVGFPTAEGSSYTIAFEDSGAGNFSVYYTYTIGPCQRFNSQPVHFINKYGGIDSYTFTLKNRKRANVERDTFGYNSDVYGTLTYDKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLELDGQLVEGIVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL
Ga0228703_100045950F003267N/AMKLIHYYHIYCGGGGQWQLILNQHMMALCNYGLIEKLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAYEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDAVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFIITF
Ga0228703_10004596F020667N/AMIVTLIAYPLNDSNVEVPYVLDTMGGTDVAITYSISDIEDVTKRRGSFSKTITLPNTPTNEKCFGFAYNIQSFVGGFTPNKKIRAAMWEDGVQVFSGVLQLLSMAKTRGKVTYEVGLFTDDVGLYQAIEGNLLVNTAGVTGMNHTPTSGHVSGTWTTSGAASSGYVYGVIDAAGFTDVYSQGGGVLLAGWWQLGPSIYVKKMVDLIFAEAGYRYSSNFFNSATFGKLVLPYAAGTMPVNLSGSNIFAQSTGTVTALSGTNTVLLFPKDTPAPFYDNSGYWVASSSTFVAPTELPTLWNVNLSLKIGNVSGYSILAAIFDVYDTITSSVITSLGGTTGVRSAPNTTIALNFNNLTIPAGSAVQLRTHPVIIGGNGPSAFALLSGSTMQWTCLQNATSIGTLDMRTALPADVKQGDLLQDLQKMFNLHIMADAQDPKLLYIEPWVDFYASGVVDWSQKADENAEQILTNGDPNASTNLIFKYKDMSDYLSKTYKQSYPLAREGYGGKLFPTQNFYGKGDKVVETSCGTLIPASFASDKVVGRTWDIDGTIASGTIKPLQTGYRIAQYNLVANQTPWLYWYGINNADGSALIVSQNNLPFVSHIDNPYSPTFDLAFEIPRLVYYNAVNASGSTINYTNNNLFNKYWKNYVNETVSKEALQLELTMMLSSVDIYQLDFRKPIYYGGIRWRLLEIRDYLVGQMKPCRVTLRRILNLAEFAPVTDVPIANDPAFLYNGPITSDPSDPNYEPPVNPELPQPGE
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