NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228703_1000893

Scaffold Ga0228703_1000893


Overview

Basic Information
Taxon OID3300022747 Open in IMG/M
Scaffold IDGa0228703_1000893 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 29-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19387
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9263Long. (o)-83.4268Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023109Metagenome / Metatranscriptome211Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0228703_10008932F024113GGAMAVFNRNTLAQVSGFDNPILAGELVWDQQTYWNLSFTSNGLPVDLTGATIDAQIVRRELSNIVDTRNGLTFDIADYNPTPAAIPLTVSNINTALGTCTLVIDAGAWSLMSTDPELEINAQNPVGYSGRVKVSFPAVGSVPADDMIIFLLFIVRSDGVIVL
Ga0228703_10008934F023109GGAMIRLATRYDIPRLLEIVEAYAFENPIQTLAQPHNHFPKYVEELLFSIIAGRGFIYIDNNMRGAIIALKQSNIWSPKVKELHELLWWVEPEHRNGTVGGRLWKAFDERASKMLEVGDIDVVITSISAHGPLIDYSKRGYKPFGASFVKE
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