NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1009063

Scaffold Ga0228702_1009063


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1009063 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4054
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008296Metagenome335Y
F023330Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_10090635F008296AGGAMNQDWVQEYELLVSNLASEYNRKYPVTEPQDIRQVLWLWFVTHPVKYKEWSKLELKDKEKLIAKSLRNAAIKYCEKEKSRVSGYELIDLYYYDSTVIEAFLPSIIGNTYEMPTKIKDLNFKFGKGEVTDGNNWLVLRSDIEKAFNKLPEAKQNILRIRFSTENSEWSVLGKELNTTAEGARKRVERAVASLIRILGGWRTYDEPDTIEETNEEESDE
Ga0228702_10090636F023330AGAAGMSEEPKDIRDLLHKNDYKNAMDLRGVPIGDVCVCGSEVFIALIAFQKKEICFYFLDGECAECGSMVTLPFPGDDEYIKEEC
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