NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1034684

Scaffold Ga0228702_1034684


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1034684 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1484
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008359Metagenome / Metatranscriptome334Y
F011762Metagenome / Metatranscriptome287N
F073457Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_10346841F011762N/AMSKKVKEIKLGKRGYKAVVKNKKFNFGDGKHIYEVIELSGPKMDKPRIFVDEESVRNYVNELETGSKMIKLETSLIKNVLSKREKRDVVASKELSAMIPDLEVI
Ga0228702_10346843F008359N/AMYMSKSKVNKKSAYTIKKVRKVMRMKDNDFEPATYEVFKVSGPNKFVKYFCSRKDAKAFIDTYTDTKMTMSIVKDIMREIKMK
Ga0228702_10346845F073457N/AMSKFTIEFKESVKNGSNRLGNLMENPYKVFAASKMSLGKKTMCVVEFTDLFGKKHMIKCSNRKQMLEAQSFLGMFKSESLKVKNILAEYPITLGRIPKKYMSELRSELKQFGFTYSFINKLAGY
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