NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228702_1035926

Scaffold Ga0228702_1035926


Overview

Basic Information
Taxon OID3300022748 Open in IMG/M
Scaffold IDGa0228702_1035926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1446
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F012975Metagenome / Metatranscriptome275Y
F014140Metagenome / Metatranscriptome265Y
F073544Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0228702_10359261F073544AGGVREYYEVIKIVFIHAERVYGSIESLGLYASKVRYQKDGIEIEEVLENDEFTVMDEIVFEHVEE
Ga0228702_10359262F000473AGGAMEFINKDKDHFKYGVNEWTGEPNKPVFYTAEMAKRIREIKKPDMHLQMDIAKYPDFLAIRLYEDNFLQYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0228702_10359264F012975GGAGVLNLTLKGVEVFIERSKTKNQESYWDNYDLLIWKQNPGGFTNIKGMFRKDKWGIAERIPVNEQGIWKLPVKYVKHFK
Ga0228702_10359266F014140N/AMNTYKVKMDVELEVIAFSETDARDYVGDIFNTDDEIKKVNIIKIVEKTK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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