NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000356

Scaffold Ga0214917_10000356


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000356 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)59716
Total Scaffold Genes91 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)65 (71.43%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004727Metagenome / Metatranscriptome426Y
F045790Metagenome / Metatranscriptome152N
F055822Metagenome / Metatranscriptome138Y
F060853Metagenome / Metatranscriptome132N
F090468Metagenome / Metatranscriptome108Y
F095362Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000035615F055822AGGAGMAGYTREFLIDAYLWRFTKVPSIDIEGLLRLEQIANKTYDTYGKDKFRDYASLDAEYIRNYKANLKR
Ga0214917_1000035625F045790AGGMADIHELREELLEEAMEYLDCKFRTQKKFAMLYFEYKLKQGIPIDNYTTFMPTIYTPQEAIDLAKAMETYVVGGNSK
Ga0214917_1000035626F060853AGGAMAVQQLLDNLYLTPAPWRKWMQTREEIIEDWKAGKDFRIQSGPYCSIRDIEYLRSSYNRVYIIHSRGSIEV
Ga0214917_1000035643F090468AGGMKLLEFTYTKQAGEVSKRAVIELVTPTKFVEGWDVTSLDNNEFANFAQAMGELRRRQHDETMQLLQDFDLKHNYRRFKPESMSDIQVEYV
Ga0214917_100003565F095362GGAGVDIPVQKKFIDWFYNKPFPSYDSKRNRNGFLEEMLDCGNVSHDSLQYWVQEAFHQGAKAQQELDSEK
Ga0214917_1000035653F004727AGGMKVTITYHDNQSFTVEEVVKLATDNYGKTAQVEVMPESTMAYDHIYFGLQQLITHEQLSLLFERDASYQQDIKKLRQEVLYKVTEIIDQVIIDNESKVG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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