NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0214917_10000649

Scaffold Ga0214917_10000649


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000649 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45158
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)41 (75.93%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001464Metagenome / Metatranscriptome689Y
F003408Metagenome / Metatranscriptome488Y
F013888Metagenome / Metatranscriptome267Y
F038675Metagenome / Metatranscriptome165Y
F071247Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000064910F000258GGAGMTANFKLDAMLEIRKFLWAELLKAKIFDEDDYYSDNVGSAIIPIIPVQQSPEMNQFLSGKKHIVYDKIGLSYEDNWLICCEQILFTVYSTDVSEINEIRNFMTDLFRRMDGSARDVNRFQSLSNKFKFHSIFIADISPTEPSEEIQGFLSTDIILEVKYSRITDRIGRFL
Ga0214917_1000064913F003408AGAAGMPELIQTFKAMQKTEDEKRKFLASLQGVNLNDEQEKEGPTFDDIRRRALGVKASGDDVLSLQGSFASEAGFGINAGLGYSKE
Ga0214917_1000064930F001464N/AMVRKKRSRVRKKFLYFFLNNKLHKVIRLSRAKNEIVAWCYPDKKRVMYSYSDAEKNMETAYTIKQVGQILGRHKVTIEEYILQGKIQKPQRVYPISNPSSRWSKFMLSESDILKLHEYILEAGYTKNIPSKTELRALLKNNIILYTKTDSGFVPVWKAE
Ga0214917_1000064943F071247GGAGGMGSNNKIPFNKTIIKNGRIIRIRKDGSIKADLGPYKVKKDK
Ga0214917_1000064948F038675N/AMKLYQSKDWLYRRYIVQKKTVTEIAIECSVSAMTIQRYLDQFGLIKRR
Ga0214917_1000064950F013888GGAMSVIGVLPASGKASRIGGIPKFCLPISDERSLLQWHVEQMLEVCDEVRVSTRAEWVPIIQNMDMNIKLIVREPSTMSDAVKFIVGEYNDTVLIGMPDTYILNAPGNIYRPLFKDNTADLILGIWECGEVLKGRVGQVLVSQDKVIGSEDKVDNCDYPDMWGTMLFQKNMIRYIDTTLDHPGKQLKEWISRGSNIKAVRPGGQYMDIGTLRGLKQLYKEMDA
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.