NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10000695

Scaffold Ga0214917_10000695


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10000695 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)44006
Total Scaffold Genes53 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (50.94%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → unclassified Siphoviridae → Synechococcus phage S-CBS4(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021068Metagenome / Metatranscriptome220Y
F034858Metagenome173Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000069532F021068GAGMKPSDYTIYAVCIQNEKVRYEAQSKIVPIMGGACNIVDAERRALREQGYVFDDEGAFLSSMNRRWGELSCIHWMLLNAEEANIGNAQYRRNWLEPKDGWYAENVLYVPEPAVFTCTLEQQFYGGHSDFNAPAITRELADTGAWAFTREEIDKLWAQNLFIGCNMVRGPKQYYKQFMATLFICLLPIWEKHKENFLSIEGYDKRALAFIAERLLTGLVLYRDKFFPGMIIETAPIGFIY
Ga0214917_1000069535F034858AGCAGGMQLKPGSVHFCISTCQKFATHTLPVIVPAMLRLGIAKDHMLIVNGGWQDSLTIADHEGVPMLLTPQNSFEYTPLIEIVEHDIEADHWFLLHDTCIPGPSFYELALSVPVDRPKKVALKNTPSMSVGLYRMDYLLRHKDRLMAIKNTDCSPEALQKWKQWGVPNEDYMLWKLDDVPTYVYHPELHGLDEWNYQGHSDVYGTGFARRIEYFPQLDLYKAKSNWQGVQPVLCLDI
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