NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10002056

Scaffold Ga0214917_10002056


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10002056 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25093
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (87.88%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034113Metagenome / Metatranscriptome175Y
F071028Metagenome / Metatranscriptome122Y
F083438Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000205613F071028AGGAGMAYAATTPWEYQTWNAGKAWPDKYSRLAGRPVTGGTYTGPINPYITDVARGVTLIVKDGVVEATLYPYQNTLADADFYILGGHTQTITDAQAAILIAAGYGDYVTPIVV
Ga0214917_100020562F034113AGAAGGMITPSYKVNKEGEEEYIDRPAVITPQVNPAVDAMYQKGKAEAYAADYVEWPTKVHATDEG
Ga0214917_100020565F083438AGGAGGMRKGTHAPASMAKPVEGKKEGDKVQGGKVMEPFAGAAKPGKKVKKG
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