Basic Information | |
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Taxon OID | 3300022752 Open in IMG/M |
Scaffold ID | Ga0214917_10003133 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 19399 |
Total Scaffold Genes | 31 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 25 (80.65%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F024770 | Metagenome / Metatranscriptome | 204 | Y |
F025725 | Metagenome / Metatranscriptome | 200 | Y |
F041730 | Metagenome | 159 | Y |
F042324 | Metagenome / Metatranscriptome | 158 | Y |
F043922 | Metagenome | 155 | Y |
F044450 | Metagenome / Metatranscriptome | 154 | N |
F056549 | Metagenome | 137 | Y |
F058789 | Metagenome / Metatranscriptome | 134 | N |
Protein ID | Family | RBS | Sequence |
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Ga0214917_1000313314 | F025725 | AGG | MSDIIEDTIKVLKSMGITSYRVSTPPGYAGIQVNLPNDSQAFFVWTKIDQVDYHFRLARFWANENPFSMWVSPNLIEALAKTRVLANQ |
Ga0214917_1000313319 | F044450 | N/A | MKAQILKSMIVDGRKLVAGDIVEVKGWRHAKALANNRYIKLIEDDAPKAVEEKVAEASKPKATKKTKEVAE |
Ga0214917_1000313320 | F024770 | AGGAG | MAVSHQRVSVGTTATKLTSDYDGKDGQTINVQNPSGGADVYLGGEGVTTTSYGYLLKADTSFSIELQDDEKLYGVVATSTQTVNIIRQGT |
Ga0214917_1000313321 | F041730 | AGG | MALPTTLSTCTVVGTYVDLSGNPVRGSINITPQTILKEVTQNVIIIPVVIQKTFDATGSFSVVLPVTSDTDVTPQPFIYTFEENFTGGRTIELALPLSVAGTTQNLADLLPALDSADAAAYVSVDSYQALLTRYNNAESIRVLVVDADEEADDADTYASDASKAAGSLANYNTNQLMMMG |
Ga0214917_1000313322 | F056549 | GGAG | MAEPYVPIARYTTADSLLTELEVTTDAAETYTDDLETAVANTLTHKETAENLVASKFDLFFLVGC |
Ga0214917_100031333 | F058789 | N/A | MGSFLSEAPCRDADPWLFDQFNLDLAQPALNYCASCIFWTECESLVKPKPNFFDGVVAGKIWRNGRILAKLDASSPSRLIVGEDSIEENFDALEFSGSELLGGADGVFLS |
Ga0214917_100031335 | F042324 | AGG | MAIWVDFFKEKLEGSKIVVDAEGKPYVSKEIAPKEYVEVELNITQQFLPYHIYFRRYDVNGVELENRLFAQVGDRDLALKSFNDLTSKRLNSFELVLDGE |
Ga0214917_100031339 | F043922 | GGAG | MTMSRRETQKAIQEAYAKWSEKVQFTSETGASDKDEAEIMETISTILKGNKPE |
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