NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10003889

Scaffold Ga0214917_10003889


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10003889 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16969
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F004760Metagenome / Metatranscriptome424N
F012569Metagenome / Metatranscriptome279N
F035221Metagenome / Metatranscriptome172N
F078641Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000388910F000635GAGMTLTEIAQYAGEKVGKTDSDTITFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRTITLGTNVETPLSVAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGVAQLNLYPRLATSGTIPLRVVEKLKCITRTNYIVDFPPSTDALGDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGIKQITPQSLGELTIEEMFSA
Ga0214917_1000388913F078641AGGMGTEDQISDLRERLARMEERQLSLYKMVETSLSNYADVVNRISSLEHLRTKALAIAGVVGLICSMAWDALKNRFNG
Ga0214917_1000388916F012569N/AMSRALDKFQGQYGFSVGTQGTATAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG
Ga0214917_1000388918F004760AGGAMPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSQFTPDSIKRAALRRKKYE
Ga0214917_100038892F035221GAGMKAIITITLTAMLMASVMADDFDGGVYDSGYAVFSGGEGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGGNEIVTKSGYLYYGSNGTKVQVGQYYSGTAGSTYVFEDDSE
Ga0214917_100038898F002149GAGGMTAVEYIEQSNVPEAMWPNLAEWFGWFEKQGMVGIVEDRDGIAGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV
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