NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10003953

Scaffold Ga0214917_10003953


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10003953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16808
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (23.53%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002985Metagenome / Metatranscriptome515Y
F008128Metagenome / Metatranscriptome338Y
F044444Metagenome / Metatranscriptome154Y
F087064Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000395311F002985AGGLRVVWNRIASVRLSSNPMSYVIACWKNNQPFAITADVKSKQFLLIPLESEVALNKIFSHPYRAGAQQILEWINKNNAELSGQELSIQDEARFRK
Ga0214917_1000395319F044444N/AMTNDILEYARQLATQPTVNFMSNYQRYDLEVPEDIHWELVKLAADLKMHHEDYAQNILIDHVERKLDQQVTG
Ga0214917_1000395326F008128N/AMEPVVVPRLTVSLAVDLEVEYNSFGGKTADEIVDDFQYELNSLLFELHPSVQKVFTKVTAVGFND
Ga0214917_100039537F087064GGAMSTKKQFKYSIGDRIAERPKSHSLIAVRKEVKQTIAQYRSQRYGTIVGFKTKLTTRGAKQNFALVQWDHLKSPTEHSLMRICPINELDKLTKQFIVPSESC
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