NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004243

Scaffold Ga0214917_10004243


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004243 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16071
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006618Metagenome368Y
F057318Metagenome / Metatranscriptome136Y
F079990Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000424310F006618N/AMNATKEIQIEGSRQDDTGWKRYIHFTHDGESYELTLFWDEFNGYEIYWQVPRVTPDWVVNWDEEAHNGNSFEAYLDDLTWDVK
Ga0214917_100042432F057318GGAGGMAKAKENNFQVSATGGAGTNGQPARYAAGIDNAQDFYDMQTSATMSGQNPAIKPSPSGGRAFRTTGQMPFVPIDSATTRPEEDILTGATTALEGMYATDQTAMGEDADRMRQALPYLAIMAELPSTSNSFRNYVRYLKSVL
Ga0214917_100042433F079990AGGAGGMKKSIAGGKKPKNQGSAGKVNVQKPLMAKKASSKGGKTYFSSNPSGTRGSRSK
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Institute for Fundamental Biomedical Research
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