NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004523

Scaffold Ga0214917_10004523


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004523 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15410
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (69.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007911Metagenome / Metatranscriptome342N
F024499Metagenome / Metatranscriptome205N
F044969Metagenome153N
F093768Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000452311F044969GAGMSASLTINPIKLQQALKAFVGNTKLEAAKEMRIQARSLCVSLANSTQPFGLNAKAKAIGEKAVTRDIDRVYKTSSTAVREIGSLPIPIGKTKTQNAKQAAAALAALVLGKSFGKGKKGIGAQTAAQALIDRLNYKPYVYTRIGEFDRGSAHDNARFGKNKRVPKNQFVRQVVTKETELARYFKQKRGNVGIAKSGWAVCAGILGGFRGIPKWIYRHTGGGRVVDRSQVKTGAFSKPYISMTNTIPWIANVISKSTVQKSIDIQVIKMIKRLSIIANYERKKAGL
Ga0214917_1000452314F093768GAGMAENPSPPKLPGKSQPLRTIRPTPDGVGISSEYINSIIDRIEDLVLVAQNQKPIAGNNIQINFTAQGAVINAVTQ
Ga0214917_100045233F024499N/AMSEFTECLKESLAALYDQTGTAATIGSTSVTGILSTITRKEAVELGGFDLDLNSTFTIDITGIATAPTIGSVLVANSVSFRIVTLDTSIGSYVLGLREF
Ga0214917_100045237F007911GGAGMPAVTMLDRLVEAALQELLATTVTGVNYHLSHDKTENLPPSIVIKATLGTEEPVQGSGVFSVPVDIIVEDSYDDTTVDAHTQKCSKVLQAFFDSSSLATRLNATTAIGSARCYNAKVDSVEPEADDEERTMRRTYRLAVIAMPNSIAS
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