NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004754

Scaffold Ga0214917_10004754


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14893
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (85.71%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Associated Families8

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000450Metagenome / Metatranscriptome1126Y
F000808Metagenome / Metatranscriptome882Y
F002071Metagenome / Metatranscriptome596Y
F002489Metagenome / Metatranscriptome554Y
F005177Metagenome / Metatranscriptome409Y
F007363Metagenome / Metatranscriptome352Y
F017484Metagenome / Metatranscriptome240Y
F078406Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000475411F005177AGGMKNRYRVEIFDEVKSNDLTIYSDEGVNKEYLTELVFSNLRRFSGNVRAYVFDNLKKKKTTALYLPMEVIPKKTELTKLLG
Ga0214917_1000475412F000808N/AMEYNYSLTISYDGELVSTTRSADLLEIVNAWNKCVDYGDAKEYATYNLSDPNGKMYTKNFYRNGQVSGK
Ga0214917_1000475414F002071AGGAMATTLEIGQTFTTEKSGVVGVIKAVDNHPSGVNRVLLDVNGTERWTSVSN
Ga0214917_1000475416F078406AGGMLSTATALIQATEESIFDEEVMGFAQAFCHHAKELDTEQFAKSIYTYSCMLASLAVDKAMKVLLNEEQIVELMNAIDEMEKMRDEVMKDGK
Ga0214917_1000475427F007363AGGAMRGYSIPDLLVDQYYAPTSLRRRFNGGIINHAEIREDTYPAEGWLDFAIRYRPTGSINDEWATVTVRVADY
Ga0214917_1000475429F017484AGGAGMSIEIFRLNENGAGWVSLENATNSELLDLELAIVTKAEMKMLCFVCHKEIAKGNVCVNHKNMKGAIYFD
Ga0214917_100047543F000450AGGAVGDRANFGFVQPNGETIVLYGHWAGYQMLGRLADAVIAARPRWNDPAYATRIAISQLIKDDWNSETGWGLHVNEISDNEHKIAIVDWNQQTFSLHEEDSHSNMDNKIRGMKNEALFTMDLSTFCEKYALDGLLVN
Ga0214917_1000475440F002489AGGAMNENEKPQNLEDNLDMVNYIMLHRIYDLLTIIANKLVGPEDTSKLIQYHEQGYLLGPTPAFTPSEESQENS
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