NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10004825

Scaffold Ga0214917_10004825


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10004825 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14762
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (79.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020909Metagenome221Y
F024097Metagenome / Metatranscriptome207N
F025466Metagenome / Metatranscriptome201Y
F054668Metagenome / Metatranscriptome139Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000482512F020909GGAGMITKRGKKLRAIAIAVGIILIWQVASNLWWVGIDAPNAEFLGWCWGSMSECVVL
Ga0214917_1000482519F025466AGGAMMFDKVKLEAIAKTYLRAAAAAVAALYLADPNQPVKNYLVAGLAAVAGPVLKALDSKSTEFGRGSK
Ga0214917_1000482522F054668AGGAGMGISTRQVTVTTAATALVDATQEAEMVYLHSSSGTCFVGNSDVTASTGYKMDNGDKITIDNKANGIWAITSSGTVTMQVMAIGK
Ga0214917_100048256F024097N/AMKWLREHGVSAERLTKAGTKDEGDIVCVVANKTYIFELKNRKAITLPAFWDEAITEANNYALARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
Ga0214917_100048257F096878N/AVVIYLEERDANLDVVEDILAAVPLVQLKGIQSLILHDLKSIESARLMDKARSAVPDLAIKLASISESEALTLAEQLITAVKYARAMRSQPLATKLELVK
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