NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10005559

Scaffold Ga0214917_10005559


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10005559 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13414
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (60.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Siphoviridae → Samistivirus → Streptomyces virus Jay2Jay(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000258Metagenome / Metatranscriptome1443Y
F001106Metagenome / Metatranscriptome776Y
F006841Metagenome / Metatranscriptome363Y
F035307Metagenome172Y
F056615Metagenome / Metatranscriptome137Y
F058150Metagenome / Metatranscriptome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100055593F006841AGGAGGLATTIYSVEEIKLQNGSTVQLKPLSIKELRKFMAVIQKTASATDQAESLDVLIEACGVALEKQLPDLVKDRDAFEDALDIPTINRILEVCGGIKMDDESANLTQAAVLAGMN
Ga0214917_100055595F000258GGAGGMTVDYKADMMLDLRKFLWSQLISNKIFTATDYYSDNIGQEIIPIIPVQQAPELNQFLSGKKHIVYDKIGLSYEDNWAICCEQVLFTIYSTDVSEINEIRNLMTDLFRRMDDSARDTNAYSGISKKFKFFSIFIADISPTSPSEELQGFLSADVVLEVKYARFLDSVGRFL
Ga0214917_100055596F035307GGAGLDNSSVLVAAASGLEKNLAGTSGAILKDSVVAQISAAIYYQAQVVSKVTTNKQFQSKFQSVIFKQLEQDFGLYVDSQARVNPKSLHHVYEWNKIGNPGSRLFKLNIASADGLSFKINSTFLPSKSSVPNKFGRRRHVFINKASVMEAGMPLTIRPRSAERLVFETNTGVVYMPKGASVTVTKPGGGASTGRFQIAYARFFTGNLVNLSIKKSGFQRLFNSSLSKAMKLPSDIKRVKYSFSPNTLNMQAESAVAAAFGGMS
Ga0214917_100055597F056615N/AMYDLVDSVMPMFMDVYRQFDLQDPNTGAIKKEWQFDRTVPCSAKGIISNSSSSRTGDKQIMSNKYINDQILQVRTSEKINLREKLTNIRDSEGNVIWEEINFPSNTPTVFELMGITPMTDPLGGVVGYNSTVKRSENQTIGQ
Ga0214917_100055598F058150N/AMEILVNSSSPITHKVFWRGQLTDADALPVVKVFDITEDPAVTPPINPGVALATLTPVKSEVDYGTYTVYIPFDYTNRQRQLRLNWVYNVNGETMYKDHKVFVQTPYTDMSQAVDSLGLGSDYSDPNSKSYLELCNAERYARKLIEAYTGQQFYLYDDVQIVYGSGSDVLPLPYKISELHELYQNDILLLDNLNDIDNWNYTTVISESGFGLRINRATMLDNTIYVANGMVPPTINDTYGGAFYNGATYRVQGTFGWDEVPDEVDLACVELMKDYFSKDKVWRNKYMKSIQTFDWQFEYNSGTYSGTGNLYVDQLLLPYVINKMVVI
Ga0214917_100055599F001106AGGAGMSFETLKVAELRKVAEDFAVDTDGLKNKADIIAALAEEGVTWSVYQKTIKDIEKAADEFSEDAEEILPRFNPNAQPEDTVLVRMTRENYRYDILGFTFTKEHPFVAMTEDDAQEIFDKEEGFRLATPKEVQEYYA
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