NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006047

Scaffold Ga0214917_10006047


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006047 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12715
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (89.74%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Associated Families17

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000441Metagenome / Metatranscriptome1136Y
F000852Metagenome / Metatranscriptome860Y
F000868Metagenome / Metatranscriptome853Y
F001019Metagenome / Metatranscriptome804Y
F001043Metagenome / Metatranscriptome794Y
F001125Metagenome / Metatranscriptome769Y
F001562Metagenome / Metatranscriptome670Y
F002245Metagenome / Metatranscriptome578Y
F004051Metagenome / Metatranscriptome455Y
F005741Metagenome / Metatranscriptome391Y
F006744Metagenome / Metatranscriptome365Y
F007468Metagenome / Metatranscriptome350Y
F015208Metagenome / Metatranscriptome256Y
F019324Metagenome / Metatranscriptome230Y
F045755Metagenome / Metatranscriptome152N
F097310Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000604711F001125AGGCGGMGDRANFGFRDRKGDTVYLYGHWAGHNMLENLSNAVSAARPRWNDESYATRICISQMVGEDWGSETGWGISVNQLADNEHKVPVIDWSKKTFTLYEEDLSTVVFSLTIDEFVNKYSRLVM
Ga0214917_1000604713F001043N/AMFRTMSQQDTQGDKMSDYKDGFDDGYKFAREEMMEKLSEIDITDIDTWILDRLCEMIEGGKL
Ga0214917_1000604714F000311GAGMYFELTAPDRLSMEMAYWDAQIIGLDPTALSPLTFNIGTGSIEKVSKIRDKYNLVESYVSDYEPTGYTGR
Ga0214917_1000604718F005741AGGMANRFRIEIYDANKANDVTIYSEQGVDKEYLTELVFSNLRKFSGKVNAYVFDNVKKKKTTAMFLDETVVDKFNTNNQLTAKELGFI
Ga0214917_100060472F000852AGGAGMTTKREYLKSQGITVGLRGRFSGAAKVALQEAATKGITFTAEKPTNKAK
Ga0214917_1000604720F004051AGGAMTIDNKVYQVGDLFTTLKSKETGVIKEIIPNSSGSVRVRLETDKGERWTTVLQDNLA
Ga0214917_1000604722F002245AGGMKNVMKVPHTIVFEALIDLDKIPANLLPALIALDQKSIEEMCKGATLHAIGMSNVLPLANENNTWAEVTIKGDN
Ga0214917_1000604728F015208GGAMYKITVTYDEATKPYCVLEYSDELQAHKEFAKFIDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK
Ga0214917_100060473F000441AGGAGGMKMSDVYINDQLNKAQQLLWGGSETENIEAHNIISKLISDRMEQVDL
Ga0214917_1000604730F045755GAGGMSEIAGMWICDNCNTLAIVSVLTDTIQITQCECVTKERETK
Ga0214917_1000604731F097310GGAMSKMKELLDEILNCDLCNGKGWVFFGNATEYDVESCECNPNELEVNY
Ga0214917_1000604732F006744AGGMNLDEFKKHVLATREASKAEALSVLSATITTQSNERENLNV
Ga0214917_1000604735F001562GGAMKSQLEKDLEIKESFIDLLNDTYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHQDYLEELEN
Ga0214917_100060475F001019AGGMTYEPSLEILEMEYSCSPGGVDTFEVYDKSDIPLSVPIYETENLTEAVLFCYNLGKDFTVRTLAEWNERELAYEASR
Ga0214917_100060477F007468AGAAGGMLTKSSSFIEYMKIHLISLNQDFDGKYNTETKIHIQGQIDATRHLLSVATDIMNSTNERYNNE
Ga0214917_100060478F019324GAGGMLGYSEKDLDEMIYAIQSVLTTVDSNDDPFLHGNLWRAQEFLQGLWAEGYFDHAN
Ga0214917_100060479F000868AGGCGGMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQLFADYRFAEMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA
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