NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006239

Scaffold Ga0214917_10006239


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006239 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12445
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (88.89%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000311Metagenome / Metatranscriptome1326Y
F000450Metagenome / Metatranscriptome1126Y
F003663Metagenome / Metatranscriptome474Y
F007363Metagenome / Metatranscriptome352Y
F014142Metagenome / Metatranscriptome265Y
F021481Metagenome / Metatranscriptome218Y
F038643Metagenome / Metatranscriptome165Y
F047650Metagenome / Metatranscriptome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000623911F021481AGGAMAPILDTAKGRFYRKGDVFTTGKSGITGTIAEIVSIRPNLTKLGLNTENGMRWAMVKIGA
Ga0214917_1000623915F003663AGGAMLSTAIGLLGATKDSIFDEDIMGLAGELHTRRNELSDEIFAKYLFMYSSAVAAKVADSITKVLLTEKELSDLIATMDEMDNLSETILEENE
Ga0214917_1000623916F038643AGGMKDMTRWALFPFTVDGVEFVSKIDIEGSMYQQVSRVPAQVFNTMNEGAIRELVGKVSLMSKDEIQAELDRVNEGYSQAYIALA
Ga0214917_1000623927F007363GGAMRGYSIVDLLVDQFYSPTSMRRRFNGGIINFAEKRENVYPPEGYEAFSIRYRPTGSFKDEWATVAVRISDY
Ga0214917_100062393F000450AGGCGGMGDRANFGFVQPNGNTIVLYGHWAGSQMLARLAEAVFKARPRWNDPAYATRIAISQMVADDWNSETGWGLHVNEIGDNEHKIAIVDFEQQTFSLHEEAPRNDLDNKVSGMNNNALFTMDLSNFVEKYADVTLSV
Ga0214917_1000623934F014142GGAGMNNTLSVIVEPSHPMASSNTKSNEVFRLANGNYISRMAYVYMVMSENLISHRYLTPNESKWVFANRVG
Ga0214917_100062394F047650GGAMTSEDLNPWIGCDKCGVAQAMYLIKLLDGELAFCGHHYNNHKEALDKKAFEVIQLNKVEEEVPQLEKAE
Ga0214917_100062396F000311GGAMYFELTAPDRLSMEMAYWDAQVTGLDPQAITPLTFNIGTGSIEKVSRIRDKYNLKETYISDYEPTGYTGR
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