NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006315

Scaffold Ga0214917_10006315


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006315 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12346
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)34 (87.18%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000868Metagenome / Metatranscriptome853Y
F003663Metagenome / Metatranscriptome474Y
F014129Metagenome / Metatranscriptome265Y
F049621Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000631518F003663AGGAMLSTAMELLDATKNSIFDEDIMAMAGELHTRRNELPDEIFAKYIFMYSSALSAKVADSITKILLTEKEMSDLIATIDEMDNLSETILEENE
Ga0214917_1000631520F049621AGGAGMAELKYFNALIATVLGTEEQAAEAKKYLAEVDPEIWREDSE
Ga0214917_100063153F000868AGGCGGMSFLENENQMVIDAEYSYIGEQLVEDWVNSNLDEGQFYADKCFAEMCESNYLKGRFNQFYDLKPGDDNYIEWDEEK
Ga0214917_1000631533F014129AGGTGGMTTLNKIREITLSNVSADEANLIVCVFCSDYANEIFCGKCNEYKGIMTLGEWLSYTQESWLM
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