NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10006754

Scaffold Ga0214917_10006754


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10006754 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11817
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (79.17%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002622Metagenome / Metatranscriptome542Y
F074876Metagenome / Metatranscriptome119Y
F078287Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000675420F000473AGGAGVSSSHFYDDKHFKYGINQWTGEPNKPVFYNEEMKKKIRELKKPGMLIMDIAMYPDFLAIRLYEDNFLQFDGIKKEQVIAYVDKVKKVIESFGVRCELEGVPSARVL
Ga0214917_1000675421F074876AGAAGGVQEFYEIINVVYIYEEKTYGTVDQLGAFASLVKYKKDGVEHEELLENDEFAIVDEIVFHHVEENNG
Ga0214917_1000675422F000671GAGGMDKILCYSCSKSKHKLNAKKSSLLPINLLMCESCINSKFEPRWLIILAGRSNGADHVREFVLKKRYIGNEISASELLV
Ga0214917_100067543F000369N/AMDIELADHFDRMNKVVEELLKGNNPTQIAAVTGFKRADVLGYIDEWKEVVRNDSGARDRAKEAISGADQHYAMLIKEAWKTVEDADQSGQLNVKATALKLIADIEGKRIGMLQEVGLLDNQELASQVAETERKQDILVKILKEVTATCPKCKMEVAKRLSQITGVVEPVVIDAEEASGS
Ga0214917_100067547F002622GGAMELQYYIEIGAITLEGMDENGEMIFAIHEKAKEVAPELWQAHIQHIDESLIKLYEKGLMEVEYDENLESTLHLSPEGQQLAKEMGLIQMDFPDTPND
Ga0214917_100067548F078287AGGAGGMPYNIRQGAAGCKGYAVVNDKGELKGCHPSKSRASAHMRALYAATANEQKMQERKKKIY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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