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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10007613 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10900 |
| Total Scaffold Genes | 33 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 26 (78.79%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (90.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000311 | Metagenome / Metatranscriptome | 1326 | Y |
| F001125 | Metagenome / Metatranscriptome | 769 | Y |
| F007363 | Metagenome / Metatranscriptome | 352 | Y |
| F007470 | Metagenome / Metatranscriptome | 350 | Y |
| F014142 | Metagenome / Metatranscriptome | 265 | Y |
| F015208 | Metagenome / Metatranscriptome | 256 | Y |
| F034472 | Metagenome / Metatranscriptome | 174 | N |
| F038643 | Metagenome / Metatranscriptome | 165 | Y |
| F073599 | Metagenome / Metatranscriptome | 120 | Y |
| F105172 | Metagenome / Metatranscriptome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_100076131 | F034472 | AGGA | MPNWVYNTVTIQGPKEEIDYIKDRLNRPFTLAQETYGMGDISLSGFPTKIQ |
| Ga0214917_1000761315 | F038643 | AGG | MSQFENWKSYPFTVDGVEFVSLLDPSGSMYQQVSKIPAYVFTAMNESAIRELIGKVSLMSKSEIQDELDRINEGYGQAYLALA |
| Ga0214917_100076132 | F001125 | AGGCGG | MGDRANFGFRQSNENVVFLYGHWAGHNMLSQLAEAVAVARPRWTDESYATRIAISQLIGEDWKQELGWGLHINEIGDNEHKVPVIDWTNQTFTLYEEDLKTVVFSMSLLDFCTKYSQLIM |
| Ga0214917_1000761322 | F015208 | GGA | MYKITVAYDENAPHFTQEIADELEAHKSFASYVDWGFAMDYSTVNLFTPNGKCYTKIFYREGRKVVEK |
| Ga0214917_1000761324 | F007363 | AGGA | MRSYSIVDLLIDQYYSPTSLRRRYNGGIINFAEKRDDVYLSEGYEAYSIRYRPTGSLKDEWATVAVRLPD |
| Ga0214917_1000761330 | F105172 | AGGA | MTLELNDYGLEFDTYVCYIALSWQVLIPATIALIAYKIYKRMKNKNVY |
| Ga0214917_1000761332 | F073599 | AGGA | MSANLYNIESLLIGKTYRSRSVVGEIISAEKHPQAVWYQDAEAYLVEIRKQGGGYTYRSVAVSV |
| Ga0214917_1000761333 | F014142 | N/A | LMNTISVIVEPSHSMASSNTKSNEVFRLANGNYISRKAYVYMVASEGLISHRYLSPNESRWVMEYRKEVA |
| Ga0214917_100076134 | F007470 | AGGAG | MDYQDGFEDGVKFAREVIIANIRQWAESSDEGQVYDDIADRIEFGTVDYDL |
| Ga0214917_100076135 | F000311 | GGA | MYFELTAPDRLSMEMAYWDAQIMGLDPQAMTPLTFNIGTGSIEKVSRIRDKFNLTETYVSEYEETGYTRR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |