NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009100

Scaffold Ga0214917_10009100


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009100 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9595
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000166Metagenome / Metatranscriptome1810Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1000910025F000166AGGMPNIPTPHEAAYFAQSIKKWQQVLSLGDWRIEKGTKPAKQAMASVEFTPTARLAVYRLGDFGAEKITPESIDKTALHEVLHIFLHDLMTVARDPKSSDEDIEMQEHRVINLLENLLYRNSNGVS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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