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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300022752 Open in IMG/M |
| Scaffold ID | Ga0214917_10009607 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9243 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 34.2611 | Long. (o) | -83.95 | Alt. (m) | Depth (m) | 2 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000258 | Metagenome / Metatranscriptome | 1443 | Y |
| F001229 | Metagenome / Metatranscriptome | 741 | Y |
| F006841 | Metagenome / Metatranscriptome | 363 | Y |
| F056605 | Metagenome / Metatranscriptome | 137 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0214917_100096071 | F056605 | N/A | TPTGYGIKVNTSSMVDNATYIANGMVAPTIYDSSGVFRSDVSYKVQGRFGWAKVPDDVELAAIELMKDYFAKDQVWKNKYVKNISTYDWQFEFTSEVYTGTGNAYADKLLSDYVMVSKVQVI |
| Ga0214917_100096072 | F001229 | AGG | MFDLIDSMLSMQLDLYRQYEQQDRDTGAIKREWQYQRTLNCYAKGIISNSSTSRSSDKQILSNKYSNEQIIQVRTSEKITMRDKVTNIRDINGNVVWTELNYPSETPTVFEIIGVTPITDPFGNTIGYNSSMKRSENQQIGF |
| Ga0214917_100096074 | F000258 | N/A | MKQMQHLFQHLRGAQMANYKLDAMFELRKYLWEKLKDNNIFDEDDYWSDNLNENIIPIVPVQQQPEMNQFLSGKKHIVYDKIGMSYENNWLICCEQILFTIYSTDLIDIVEIRNFMTDEFRRMDDSARDINYWDNLSDKYKFYSIFIADISPTAPSEELQGFFSADVILELKYSRITDKDGRFA |
| Ga0214917_100096076 | F006841 | AGGAGG | LATKVYDVEEIELQNGDKVKLKPLSIKQLRKFMEVVKKTQDSNDETITLGILVEACGVALETQLPDLVADRDKLEEALDVPTINRILEVCGGIRMDDPNLIAAAVLAGQN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |