NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10009860

Scaffold Ga0214917_10009860


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10009860 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9069
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028157Metagenome192Y
F051124Metagenome144Y
F085645Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100098602F085645AGGMTDGAEILTEAHDLITGPRQAEYSHPFDDYYKVRELFYSMTGVMLSVKQAVTFMICVKMARLSTNLDNDTWKRDTVVDAAGYLGCLAMVHQRIEERMGRITDGLYRNEATRDEITADELL
Ga0214917_100098603F028157GGAMTTPDTDYLTPKFVTVMADHDGYARWVGSIDATDIMQAYRTGGVYILVMLDEEGRITLGFKPGRHWEASWSPPISLERR
Ga0214917_100098605F051124N/AMTKKTDFIEQYINAQGNGWCIRYICIAIVEDEVGEQQFLVQASPNQTAAETIGLCEAVSHIQKTKIAKAWIREEDDQTDE
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