NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10010404

Scaffold Ga0214917_10010404


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10010404 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8742
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003965Metagenome / Metatranscriptome459Y
F013526Metagenome / Metatranscriptome270Y
F026861Metagenome / Metatranscriptome196Y
F029721Metagenome / Metatranscriptome187Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001040411F029721AGGAMRTYSIEDLLVGQYYRPTSLARRFQGGEINFAEKRDIWVGTDYQAYSIRYNGNNWATIAVRVSDL
Ga0214917_1001040414F000808GAGGMEYTYALTTSYDGELVNTLRVSDMLEAVNAWTKCVDFGDAKEYATYNLSDPLGKMYTKTFYRNGEVSIR
Ga0214917_100104042F003965AGGTGGMTTLTITKCYEHNPMKSAISEVSDTQYTFCQDCEENIERWYDDTDPERLPMWTDWKVSK
Ga0214917_100104045F013526AGGAGLTKKNVLISFVTEAETDLNAVFDLNKIFLALPESDLVKFDVFDVLDVVE
Ga0214917_100104047F026861AGGAMKLHEFQEMIKAQQEAQRLTNLEKIAKIVSTNPKKGNN
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