NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10011738

Scaffold Ga0214917_10011738


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10011738 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8046
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (82.61%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F004132Metagenome / Metatranscriptome451Y
F005348Metagenome / Metatranscriptome403Y
F012455Metagenome / Metatranscriptome280Y
F047494Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001173811F000808AGGAGMEYNYSLTTSYDGELVHTLRVSDMLEAVNAWTKCVDYGTAKEYATYNLSDPTGKMYTKTFYTNGKVAIK
Ga0214917_1001173815F005348AGGMINSVMSFNCNECNGKGLIFWGDNLDYNVEQCECENFTLGELFTTREAN
Ga0214917_1001173820F012455N/AMLDKIKNKVIRIQELRRSNAATPIPNKKKYTRKVKHKNGKTK
Ga0214917_1001173822F047494AGGAMNSLKNKECAKHLPNKLAISLVNDVKYTFCELCEQNIYSHYIEDSELLSYWSSWKVGK
Ga0214917_100117383F004132AGGAVSDILTQEQLSVPYNPNLLVTYKYIPETYAAPESPTFMTDKVTQIEWDLHNGRNTLKQLAERRLDISWLEDQIVEWHDPNYTKHDVLQAIMEHFGFNPTKQVEVQGTVSFSGTINVPLSEIEDFDLSNVTIDVDLSSYEYDADLNVDEVSLEDHY
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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