NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10012986

Scaffold Ga0214917_10012986


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10012986 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7494
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000545Metagenome / Metatranscriptome1038Y
F000645Metagenome / Metatranscriptome962Y
F002241Metagenome / Metatranscriptome579Y
F005585Metagenome / Metatranscriptome395Y
F014016Metagenome / Metatranscriptome266N
F031093Metagenome / Metatranscriptome183N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001298610F002241AGGAGMGREEVSRPHSIRYIRQLMEWGFDKEFIARDCGINLASLETRLRRAKERERNGNQRTEPRTGSGKSDS
Ga0214917_100129864F031093GAGMQAVELATLVASVLGSIALLVGGLRYIIKLENIPIVSRLDKMESQLELALAKGVRNGNAKARK
Ga0214917_100129866F014016GGAMVNKIALIRFDSQAGAWTDETNWVKGSIIRRFAKERMGKKQLRGRLSKAEISAYWLDKYGVNADVA
Ga0214917_100129867F005585GAGGVTGSTMLVTPYSTGALSMATRGTIFYAFTKSRELSVFSSETHLNWHLLLLRQNSQEWWKVQSARIRISISLDTPLSWVDADFLHQKIGMTLSLTRNHNQNQYCDYCKSRWGQIKGEWHLKARTPAVWKVQSETPLRKAQVRFYCQPCADEVQNWPDGTFYSLKEQLEDAINNFAGREKLNVELPR
Ga0214917_100129868F000645GAGMSNYLDDYVSVQDRLKEFINAYPDYRIKTHTLAESLVANCDVYIVKVELYRTEADPNPWTTGLSSESKSKQYALELAETGALGRALNLAGFFAKPTAAPKKAIQTTKPELASFIKEQRPNDPEPIVWDVSAIAEKLGAEVVDEIPLCQYGRGPMILKSGSKDGKEYRGYVCPHKDSEKQCPAKWMKIGADGHWVFQK
Ga0214917_100129869F000545N/AMRTDAHPFICSNCKLVTPHIELNRYETSDIPDAPEEVWLIECQRCFMQRIIYPSDRVASKEDDIVRCNQCGNWKMKAGNCRICRLAAGFEKQMVQYWNGNATMERPYDDANL
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