NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10014512

Scaffold Ga0214917_10014512


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10014512 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6923
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (78.95%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F004132Metagenome / Metatranscriptome451Y
F012455Metagenome / Metatranscriptome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001451211F000808AGGAGMEYNYSLTTSYDGELIHTLRVSDMLEVVDAWNKCVDYGTAKEYATYNLSDPIGKMYTKTFYRNGEVVIR
Ga0214917_1001451219F012455N/AMLKEIKNKIIRIQELRRSNAATAIPNKKKYSRKVKHKNGKQ
Ga0214917_100145123F004132AGGMSPVSEVLTQEQLTVSYNPNLLVTYKYVPETFAAPESPTFMTDKVTDIEWQLHKSRQYADIAAERRSDISWLEDQIAEWYDPNYSKEDVLQQLAERFKLNPTKQIEVQGTVSFSGTINVPVSELDGFDLSNVTIDVDLNSYEYDADLNVDEVSLEDHY
Ga0214917_100145129F003393GAGGMIDLENDDTIPIVDYVKVDVLTSGQLEIDDCILIGNEVVSIVDIVSLPDGYTLEVVNDFGERDVIEVGEYEQFDLMMLQ

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