NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10019572

Scaffold Ga0214917_10019572


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10019572 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5617
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (94.12%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004231Metagenome447Y
F015570Metagenome253Y
F020664Metagenome222Y
F024504Metagenome205N
F029673Metagenome187N
F043820Metagenome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1001957211F043820GGAGMTKTEAHAHLDKLREGHPMPVALTTKALLITGDIPRIPNKSLCSDGNECRNDRASPTPYQGVKGRFSYSRYLDSTTN
Ga0214917_1001957214F020664GGCGGMEKQETKHNLIKFTEAERHILKTIGKGSYSEGARICIAWAAHFYNLGLTTEMDIRHIGLVTVSSTDNYPHE
Ga0214917_100195722F024504AGGAGMDRPIVGITAPYRKSDYTYQNMLLDRIKDLEALVAKLEQRIKVLEAK
Ga0214917_100195723F015570GAGMNDKLDEAFDLLEFDVTDQIRNSTYLAEQRKISTGVTDGSIQRALVRDLTENLRTLPVSNDPLLIRNDVLEEVAVELAKLPFGDTAASYAAFVRAMKS
Ga0214917_100195724F029673GGAMGRRMTKAEMITHLRMAACNENTVTGMANAFDLGAEHERDVIASIIFNMVKEQHLAQNIVDTIRVRE
Ga0214917_100195726F004231AGGAGMSVKPSDFKHEICVYLEGIGECLVCFDILTPGEELDADHSDDYEIDFAVFDEDDKHITYDISKKQYNHCENKAMDEMLDITTQWHKEWESV
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