NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10022060

Scaffold Ga0214917_10022060


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10022060 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5160
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012968Metagenome / Metatranscriptome275Y
F028785Metagenome / Metatranscriptome190N
F041488Metagenome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100220602F012968N/AMELDINLTETVSCAMAQETGTPVQECEFQANQMTGTDNSLDDLEVISEE
Ga0214917_100220603F028785AGGAMRPIRKQELDYLDRLINNKFQEKQSAIRSQCEIEVQKQLEKDFDKFVATLKLDKLIKEAEVAEKEYLDFKASKDMKENALHHNANKKKQALKDKFNHWNEIRQWHLSSRSDNDLDCILSTIKSACRVELEEKYKNSEKGKFFKYLESGIEDARNTLYSGLSIDDVWKNLENIFNKAQIEVRVPKSFAQIAK
Ga0214917_100220606F041488AGGAGMSHFYGRISESARKTQPTARAHHSLRVEAQSWQGKIVTRLRREKDGDFFEVWREPHGGSGGDYLLLVQGRIDLKDKFAKAS
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