NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10026868

Scaffold Ga0214917_10026868


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10026868 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4463
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F010897Metagenome / Metatranscriptome297Y
F020860Metagenome / Metatranscriptome221N
F025679Metagenome / Metatranscriptome200Y
F035200Metagenome / Metatranscriptome172Y
F035215Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1002686811F010746GGCGGMTYKCAVSGEALPPERVEALQVLGVPESQWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGSLFDNAIIAEVEQ
Ga0214917_1002686812F035200GAGGMNVRYIVLRDGIRVSEDMHTDLAEAEHEAEHWRKIIRTWPDGTKVVIKKIGGDR
Ga0214917_100268682F025679AGGMTKTFKIGEYALGGKIRVSIPKTLTNIKIDVLDSNYGTNKLVNQYIYYSFDRIRIERDLWQITSGYWTDQITKWITNNWQVEVAENLI
Ga0214917_100268684F035215GAGMMRMKMKSSEQIAKEISDRIAEYKVLMVEHNNNQSAVDELESAIHELDHLLRWINE
Ga0214917_100268686F010897N/ALKYYWPMKLINTTSYCSDKLKEIIKWCMPQGVFLKDIRKIDIGNTKLNWHGRAWSSMRLHVGVPAYNKYIKPYKSGGFRGYLEVNTYTWEESLIELIAHELRHIYQYKKGKFYHGIKKIRKYNMGTKAKLCEVDASLYAMRKVREYRKNNIKFNLV
Ga0214917_100268689F020860N/AMEITKAKKLKEGGYALYGIDPKTKSEIQVGYIGENLTLEAWLPKGVKVENS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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