NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10028756

Scaffold Ga0214917_10028756


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10028756 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4240
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (76.92%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F032536Metagenome / Metatranscriptome179Y
F039497Metagenome / Metatranscriptome163N
F062447Metagenome / Metatranscriptome130N
F082149Metagenome / Metatranscriptome113N
F104482Metagenome / Metatranscriptome100N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0214917_100287561F082149AGGMKLGLHIDWCIGRWFGRNNNLEIRFTLPTISLGYKNEDDNKWFGFKFNLSTDISFESYEYGKIFSLTLFGFGVKVSKFNL
Ga0214917_1002875610F032536GGAMSQKQTFEELMRSFRFHKNPILNWVLGNNNYLYHTFLNTKWKVKNVLQKLTRGFSDSDCWNLPQSTANFLLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKENDFVFNEKLGCYTDKTTGLGISLDEKEYEYILDEIIFALQMLVDEDNIDIDLDRLYEVYPKGFDPIKDRQMFLTRQEDGTSLVEFETKDNIQPDYSKLNKAYERQRNGLLLLGLYFKDLWD
Ga0214917_1002875612F104482N/AMKKKKKRMTSEEFEKTMKAQGCFVSKVYYRITFKGMGLYILNSFQFKLLPKFFYMSGKYFTECGFHWLGWIFEFQWNR
Ga0214917_100287562F039497N/AMSEENNFNCDAGNQLRETLFKDIVRYAKESDMTAFQAIGVLESLKYDLLNAMREMDNEEEEQ
Ga0214917_100287566F104483GGAGMKKKIIDKIDLVIEDIINIQELIDFDTSDSSEHDLDSVVNLLAEIRGKVNNEVEDVEKIDLKDL
Ga0214917_100287568F024040AGAAGMILKMMKMMETIILHTDMNFFVSGHNWLAKVALEKDIKKSDRYTEATTRAIESLLDQEEKEGVNLKVLDYDDYGLGLITLTYDEKDSKKEGEHRVMLTSNILANAGRWDDYKTIKDYEEKCKEEGL
Ga0214917_100287569F062447AGAAGGMKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWGGTNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVRETLNKL
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