NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0214917_10032182

Scaffold Ga0214917_10032182


Overview

Basic Information
Taxon OID3300022752 Open in IMG/M
Scaffold IDGa0214917_10032182 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BB
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3909
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier, Atlanta, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)34.2611Long. (o)-83.95Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F001477Metagenome / Metatranscriptome687Y
F013279Metagenome / Metatranscriptome272Y
F020863Metagenome221Y
F093483Metagenome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0214917_1003218213F000821AGGAGGMNEEYLKAKFDLCISEAEKDLQEQEIARAIKNLQRANSALTRLFGLDEEAEND
Ga0214917_1003218215F001477GGAGGMSNIYTIHPPKSDLILFYEVVEPDGGNTWGGASAEHCIEWLSLAPSGSRVLVSAWDSDEEDAHLVGQTIDITEIVRAASL
Ga0214917_1003218218F013279AGGCGGMQYDYRCPDCNTELTIERSIHEVPREPSCFDCHIPMVRKWDSPSITFKGKGFYSTGE
Ga0214917_100321824F093483GAGGMTVEKTYAGALVVSALVSWEGVKFLESSTYYGYTVKEAKESFLESCKRLNYELL
Ga0214917_100321825F020863AGGMQTTIEEVRSLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVFFSGGSKYGSGHCEPRGFSDYLGGSKAEAAQSLRKLIAGIHTGLLIAEKAGK
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